|
Alpha
|
B.1.1.7
|
United Kingdom
|
N501Y, D614G, P681H
|
September 2020
|
Increased (v) (9)
|
Similar
|
Increased (v) (10, 11)
|
Drastically reduced circulation in the EU/EEA following the emergence of
Delta; little evidence of impact on vaccine induced immunity
|
|
n/a
|
B.1.1.7+E484K
|
United Kingdom
|
E484K, N501Y, D614G, P681H
|
December 2020
|
Increased (v) (9)
|
Increased (v) (12, 13)
|
Increased (v) (10)
|
Very low levels of circulation in the EU/EEA
|
|
Epsilon
|
B.1.427/B.1.429
|
USA
|
L452R, D614G
|
September 2020
|
Unclear (14)
|
Increased (v) (14)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA and
available data indicating that vaccines and treatments are effective against
such variant
|
|
n/a
|
B.1.616(c)
|
France
|
V483A, D614G, H655Y, G669S
|
February 2021
|
Detection (c) (15)
|
No evidence
|
No evidence
|
Not detected since 2021-04-23 (16)
|
|
Eta
|
B.1.525
|
Nigeria
|
E484K, D614G, Q677H
|
December 2020
|
No evidence
|
Increased (m) (12, 17)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Theta
|
P.3
|
The Philippines
|
E484K, N501Y, D614G, P681H
|
January 2021
|
Increased (m) (9)
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Kappa
|
B.1.617.1
|
India
|
L452R, E484Q, D614G, P681R
|
December 2020
|
Increased (v) (18)
|
Increased (v) (19-22)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.620
|
Unclear (b)
|
S477N, E484K, D614G, P681H
|
February 2021
|
No evidence
|
Increased (m) (12, 23)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.617.3
|
India
|
L452R, E484Q, D614G, P681R
|
February 2021
|
Increased (m) ((9)1)
|
Increased (m) (12, 14)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.214.2
|
Unclear2
|
Q414K, N450K, ins214TDR, D614G
|
December 2020
|
No evidence
|
No evidence
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
A.23.1+E484K
|
United Kingdom
|
V367F, E484K, Q613H
|
December 2020
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
A.27
|
Unclear (b)
|
L452R, N501Y, A653V, H655Y
|
December 2020
|
Increased (m) (9)
|
Increased (m) (14)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
A.28
|
Unclear (b)
|
E484K, N501T, H655Y
|
December 2020
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
C.16
|
Unclear (b)
|
L452R, D614G
|
October 2020
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.351+P384L
|
South Africa
|
P384L, K417N, E484K, N501Y, D614G, A701V
|
December 2020
|
Increased (v) (24)
|
Increased (v) (25, 26)
|
Unclear (27)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.351+E516Q
|
Unclear (b)
|
K417N, E484K, N501Y, E516Q, D614G, A701V
|
January 2021
|
Increased (v) (24)
|
Increased (v) (25, 26)
|
Unclear (27)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.1.7+L452R
|
United Kingdom
|
L452R, N501Y, D614G, P681H
|
January 2021
|
Increased (v) (9)
|
Increased (m) (14)
|
Increased (v) (10)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.1.7+S494P
|
United Kingdom
|
S494P, N501Y, D614G, P681H
|
January 2021
|
Increased (v) (9)
|
Increased (m) (28)
|
Increased (v) (10)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Iota
|
B.1.526
|
USA
|
E484K, D614G, A701V
|
December 2020
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.526.1
|
USA
|
L452R, D614G
|
October 2020
|
No evidence
|
Increased (m) (14)
|
No evidence
|
Lineage withdrawn from Pango
|
|
n/a
|
B.1.526.2
|
USA
|
S477N, D614G
|
December 2020
|
No evidence
|
No evidence
|
No evidence
|
Lineage withdrawn from Pango
|
|
Zeta
|
P.2
|
Brazil
|
E484K, D614G
|
January 2021
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.1.519
|
Mexico
|
T478K, D614G
|
November 2020
|
No evidence
|
Increased (m) (14)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
AV.1
|
United Kingdom
|
N439K, E484K, D614G, P681H
|
March 2021
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
AT.1
|
Russian Federation
|
E484K, D614G, N679K, ins679GIAL
|
January 2021
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
C.36+L452R
|
Egypt
|
L452R, D614G, Q677H
|
December 2020
|
No evidence
|
Increased (m) (14)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
P.1+P681H
|
Italy
|
D614G, E484K, H655Y, K417T, N501Y, P681H
|
February 2021
|
No evidence
|
Unclear (29, 30)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Mu
|
B.1.621
|
Colombia
|
R346K, E484K, N501Y, D614G, P681H
|
January 2021
|
Increased (m) (9)
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Lambda
|
C.37
|
Peru
|
L452Q, F490S, D614G
|
December 2020
|
No evidence
|
Increased (v) (31, 32)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
AY.4.2
|
United Kingdom
|
L452R, T478K, D614G, P681R, A222V, Y145H
|
June 2021
|
Increased (v) (33)
|
Similar (v) (33, 34)
|
Similar (v) (33)
|
Delta sub-lineages will continue to be monitored within Delta VOC
|
|
n/a
|
B.1.1.318
|
Unclear (b)
|
E484K, D614G, P681H
|
January 2021
|
No evidence
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.617.2 + K417N
|
United Kingdom
|
L452R, T478K, D614G, P681R, K417N
|
June 2021
|
No evidence
|
No evidence
|
No evidence
|
Delta sub-lineages will continue to be monitored within Delta VOC
|
|
n/a
|
C.1.2
|
South Africa
|
D614G, E484K, H655Y, N501Y, N679K, Y449H
|
June 2021
|
Increased (m) (9)
|
Increased (m) (12)
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.617.2 + E484X
(d)
|
India
|
L452R, T478K, D614G, P681R, E484X (d)
|
April 2021
|
No evidence
|
No evidence
|
No evidence
|
Delta sub-lineages will continue to be monitored within Delta VOC
|
|
n/a
|
B.1.617.2 + Q613H
|
India
|
L452R, T478K, D614G, P681R, Q613H
|
April 2021
|
No evidence
|
No evidence
|
No evidence
|
Delta sub-lineages will continue to be monitored within Delta VOC
|
|
n/a
|
B.1.617.2 + Q677H
|
India
|
L452R, T478K, D614G, P681R, Q677H
|
April 2021
|
No evidence
|
No evidence
|
No evidence
|
Delta sub-lineages will continue to be monitored within Delta VOC
|
|
Beta
|
B.1.351
|
South Africa
|
K417N, E484K, N501Y, D614G, A701V
|
September 2020
|
Increased (v) (24)
|
Increased (v) (25, 26)
|
Increased (v) (11, 27)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Gamma
|
P.1
|
Brazil
|
K417T, E484K, N501Y, D614G, H655Y
|
December 2020
|
Increased (v) (35)
|
Increased (v) (36)
|
Increased (v) (11)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
B.1.640
|
The Republic of Congo
|
D614G, F490R, N394S, N501Y, P681H, R346S, Y449N, 137?145de
|
September 2021
|
No evidence
|
No evidence
|
No evidence
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
n/a
|
XF
|
United Kingdom
|
Omicron-like
|
January 2022
|
No evidence
|
No evidence
|
No evidence
|
No longer detected.
|
|
n/a
|
XD
|
France
|
NTD Delta-like; remaining Omicron-like
|
January 2022
|
No evidence
|
No evidence
|
No evidence
|
No longer detected.
|
|
Delta
|
B.1.617.2
|
India
|
L452R, T478K, D614G, P681R
|
December 2020
|
Increased (v) (37)
|
Increased (v) (38-40)
|
Increased (v) (39, 41)
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.1
|
South Africa and Botswana
|
(x)
|
November 2021
|
Increased (v) (42, 43)
|
Increased (v)(44-46)
|
Reduced (v) (47-49)
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.3
|
South Africa
|
(z)
|
November 2021
|
No evidence
|
No evidence
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.2 + L452X
|
n/a
|
L452X
|
n/a
|
No evidence
|
Increased (50)
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
XAK
|
Germany
|
|
June 2022
|
No evidence
|
No evidence
|
No evidence
|
No longer detected.
|
|
Omicron
|
B.1.1.529 + R346X
|
n/a
|
R346X
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Instead of mutational proxies, tracking by lineages (majorly BQ.1 and
BF.7)
|
|
Omicron
|
B.1.1.529 + K444X,
N460X
|
n/a
|
K444X, N460X
|
n/a
|
No evidence
|
Increased (m)(51)
|
No evidence
|
Instead of mutational proxies, tracking by lineages (majorly BQ.1)
|
|
Omicron
|
B.1.1.529 + N460X,
F490X
|
n/a
|
N460X, F490X
|
n/a
|
No evidence
|
Increased (m)(51)
|
No evidence
|
Instead of mutational proxies, tracking by lineages (majorly BA.2.75 and
XBB)
|
|
Omicron
|
BA.2.3.20
|
n/a
|
K444R, L452M, N460K
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BF.7
|
n/a
|
R346T, F486V
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.2
|
South Africa
|
(y)
|
November 2021
|
Increased (v)(42, 52)
|
Increased (v) (46)
|
Reduced (v)(53, 54)
|
Parental lineages are no longer circulating, ECDC monitoring sub-lineages
in circulation
|
|
Omicron
|
BA.4
|
South Africa
|
L452R, F486V, R493Q
|
January 2022
|
No evidence
|
Increased(50, 55)
|
No evidence
|
Parental lineages are no longer circulating, ECDC monitoring sub-lineages
in circulation
|
|
Omicron
|
BA.5
|
South Africa
|
L452R, F486V, R493Q
|
February 2022
|
No evidence
|
Increased(50, 55)
|
Unclear (56)
|
Parental lineages are no longer circulating, ECDC monitoring sub-lineages
in circulation
|
|
Omicron
|
XBC (x)
|
n/a
|
N440K, F486P
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected (a)
|
|
Omicron
|
BN.1
|
n/a
|
R346T, K356T, F490S,
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected (a)
|
|
Omicron
|
XAY
|
n/a
|
F486P
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected (a)
|
|
Omicron
|
BQ.1
|
n/a
|
K444T, N460K
|
n/a
|
Increased (5)
|
Increased (2, 3, 61-63)
|
Unclear (64)
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
XBB (z)
|
n/a
|
N460K, F490S
|
n/a
|
Increased (1)
|
Increased(57-61)
|
Unclear(62)
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
CH.1.1
|
n/a
|
K444T, L452R
|
n/a
|
Increased (1, 63)
|
Increased (v) (57, 58, 60, 64)
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
XBB.1.16
|
n/a
|
E180V, T478R, F486P
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected (a)
|
|
Omicron
|
BA.2.75
|
India
|
W152R, F157L, I210V, G257S, D339H, G446S, N460K, Q493 (reversion)
|
May 2022
|
Unclear (65)
|
Similar to Baseline (57, 58, 66)
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
DV.7.1
|
n/a
|
K444T, L452R, L455F
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
XBB.1.5-like + L455F + F456L
|
n/a
|
L455F, F456L, N460K, S486P, F490S
|
n/a
|
No evidence
|
No evidence
|
No evidence
|
Detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.2.87.1
|
South Africa
|
(q) (e)
|
2023 September
|
No evidence
|
No evidence
|
No evidence
|
Not detected in EU/EEA
|
|
Omicron
|
XBB.1.5-like
|
United States
|
N460K, S486P, F490S
|
n/a
|
Similar to Baseline (1, 2)
|
Reduced (v) (1, 3, 5)
|
Similar to Baseline (4)
|
No longer detected or detected at extremely low levels in the EU/EEA
|
|
Omicron
|
BA.2.86 + R346T + F456L
|
n/a
|
R346T, F456L
|
|
No evidence
|
No evidence
|
No evidence
|
Decreased to low proportions in EU/EEA
|
|
Omicron
|
BA.2.86 + R346T
|
n/a
|
R346T
|
|
No evidence
|
No evidence
|
No evidence
|
Decreased to low proportions in EU/EEA
|
|
Omicron
|
BA.2.86 + F456L
|
n/a
|
F456L
|
|
No evidence
|
No evidence
|
No evidence
|
Mutation present in the majority of circulating descendants
|
|
x: A67V, ?69-70, T95I, G142D, ?143-145, N211I, ?212, ins215EPE,
G339D, S371L, S373P, S375F, K417N, N440K, G446S, S477N, T478K, E484A, Q493R,
G496S, Q498R, N501Y, Y505H, T547K, D614G, H655Y, N679K, P681H, N764K, D796Y,
N856K, Q954H, N969K, L981F
y: G142D, N211I, ?212, V213G, G339D, S371F, S373P, S375F, T376A,
D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H,
D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
z: A67V, ?69-70, ?143-145, N211I, ?212, G339D, S371F, S373P, S375F,
D405N, K417N, N440K, G446S, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H,
D614G, H655Y, N679K, P681H, D796Y, Q954H, N969K
q:
G75D,S98F,V126A,W152L,R190S,K417T,K444N,V445G,L452M,N481K,V642G,K679R,S691P,T791I,Y796H,D936G
n/a: not applicable, no WHO label has been assigned to this variant at
this time
All sub-lineages of the listed lineages are also included in the variant,
e.g., B.1.429.1 is included in B.1.427/B.1.429 as it is a sub-lineage of
B.1.429.
(a) No assessment of transmission is given for variants in the monitoring
category, only detected/not detected.
(b) The earliest detections from several different countries are close in
time and there is no clearly demonstrated travel link to a specific country
that explains the detections.
(c) The property of concern for this variant was the fact that there are
reports of difficulties associated with detecting it in upper respiratory
tract samples. These difficulties were not caused by primer-template mismatch
but rather by the virus not being present in sufficient quantities in the
upper respiratory tract.
(d) Any amino acid substitution
(e) Preliminary mutations based on a limited number of genomes
|